Molecular structural investigations of quinoxaline derivatives through 3D-QSAR, molecular docking, ADME prediction and pharmacophore modeling studies for the search of novel antimalarial agent
Achal Mishra, Vibhu Jha, Harish Rajak (2022)
Vibhu Jha has
studied B. Pharm. from Chhattisgarh Swami Vivekananda Technical University
(CSVTU), Bhilai, India (2008 – 2012). Vibhu undertook M. S. Pharm. (Medicinal
Chemistry) from the National Institute of Pharmaceutical Education and Research
(NIPER), Raebareli, India (2013 – 2015). As a part of his masters dissertation,
he spent one year at the CSIR – Central Drug Research Institute (CDRI),
Lucknow, India, working on ‘In silico studies and synthesis of
antidiabetic agents.’ Vibhu subsequently joined School of Pharmacy, ITM
University, Gwalior, India as an Assistant Professor carrying out teaching and
research activities at UG level (2015 – 2017). Vibhu obtained an international
fully-funded PhD position at the Department of Pharmacy, University of Pisa,
Italy and was awarded ‘Excellent honours’ (2017 – 2021). His PhD was focused on
molecular modeling and virtual screening studies to identify new anticancer hit
compounds, against druggable protein targets. In addition, Vibhu spent 6-months
as a visiting PhD researcher at the Institute of Cancer Therapeutics (2019),
gaining medicinal chemistry experience.
Vibhu joined
School of Life Sciences, University of Dundee, UK, as a Researcher in Molecular
Modeling, focussing on antitubercular and antimalarial drug discovery (2021 –
2022). Vibhu subsequently moved to the Department of Chemistry and Molecular
Biology, University of Gothenburg, Sweden as a Postdoc (2022 – 2023), working
on various anticancer drug discovery projects driven by the state-of-the-art
computational modeling techniques, also including masters project supervision, and teaching. Vibhu joined Institute of
Cancer Therapeutics as an Assistant Professor in Computational Drug
Design. Vibhu utilizes conventional computational modeling tools such as
docking, molecular dynamics, virtual screening etc along with the
state-of-the-art Artificial Intelligence and Machine Learning tools to study
protein – ligand, protein – protein , protein – DNA interactions, that further
helps to develop small molecule inhibitors/modulators against various cancer
types. Vibhu is an active collaborator
with different research groups in Italy, Sweden, Germany and India.
My research involves utilizing a wide range of computational
modeling techniques such as homology modeling, docking, molecular dynamics
simulations, QM/MM simulations and binding free energy calculations to study
protein – ligand and protein – protein interactions, their mechanism of activation/inhibition
relevant to cancer. The research is further supported by structure-based and
ligand-based drug design studies involving high-throughput virtual screening, pharmacophore
and QSAR modeling to develop new hit and lead compounds against cancer drug targets
as following:
(A) Targeting
1C metabolism pathway to develop selective inhibitors of methylenetetrahydrofolate
dehydrogenases (MTHFD2), serine hydroxy methyltransferase 2 (SHMT2) and dihydrofolate
folate reductases (DHFR) against breast and colorectal cancers.
(B) Developing
dual inhibitors of mutated epidermal growth factor receptor tyrosine kinases EGFR
(L858R/T790M)/ACK1 as a new therapeutic strategy to overcome drug resistance in
lung cancers.
3
(C) Developing
inhibitors that simultaneously inhibit human topoisomerases (hTopos) and
histone deacetylases (HDACs), showing dual mode of inhibition against lung
cancer.
Artificial intelligence and machine learning
routines such as random forest (RF), support vector machine (SVM), artificial
neural network (ANN) are furthermore employed to develop predictive and
generative models against (1) ALDH1A1, ALDH1A2, ALDH1A3, ALDH3A1 and ALDH71
isoforms (2) EGFR (L858R/T790M) and ACK1 kinases, using huge chemical databases.
Achal Mishra, Vibhu Jha, Harish Rajak (2022)
Vibhu Jha, Leif A. Eriksson (2023) Drug Repurposing . De Gruyter.
Elisabet Batlle Rocafort; Ali I. Ibrahim; Maria Sadiq; Sneha Smarakan; Vibhu Jha; Tiziano Tuccinardi; Fiona Frame; Norman Maitland; Rafael Jiménez Aguilar; Raquel Pequerul Pavón; Xavier Parés Casampera; Goreti Ribeiro Morais; Jaume Farrés Vicen; Klaus Pors (2022) Proceedings: AACR Annual Meeting.
Vibhu Jha (2018) Joint Event on 8th World Congress on Chemistry and Organic Chemistry & International Conference on Biomedicine & Pharmacotherapy.
Jha V;Eriksson LA; (2023) ChemistryOpen. 12
Jha V;Holmelin FL;Eriksson LA; (2023) Acs Omega. 8
Ali I M Ibrahim, Elisabet Batlle, Smarakan Sneha, Rafael Jiménez, Raquel Pequerul, Xavier Parés, Till Rüngeler, Vibhu Jha, Tiziano Tuccinardi, Maria Sadiq, Fiona Frame, Norman J Maitland, Jaume Farrés, Klaus Pors (2022) Journal of Medicinal Chemistry. 65
Ibrahim AIM;Abul-Futouh H;Bourghli LMS;Abu-Sini M;Sunoqrot S;Ikhmais B;Jha V;Sarayrah Q;Abulebdah DH;Ismail WH; (2022) Current Issues in Molecular Biology. 44
Ibrahim AIM;Ikhmais B;Batlle E;AbuHarb WK;Jha V;Jaradat KT;Jiménez R;Pequerul R;Parés X;Farrés J;Pors K; (2021) Molecules. 26
Jha V;Galati S;Volpi V;Ciccone L;Minutolo F;Rizzolio F;Granchi C;Poli G;Tuccinardi T; (2021) Journal of Biomolecular Structure and Dynamics. 39
Jha V;Macchia M;Tuccinardi T;Poli G; (2020) Cancers. 12
Jha V;Biagi M;Spinelli V;Di Stefano M;Macchia M;Minutolo F;Granchi C;Poli G;Tuccinardi T; (2020) Molecules. 26
Poli G;Lapillo M;Jha V;Mouawad N;Caligiuri I;Macchia M;Minutolo F;Rizzolio F;Tuccinardi T;Granchi C; (2019) Journal of Enzyme Inhibition and Medicinal Chemistry. 34
Poli G;Jha V;Martinelli A;Supuran CT;Tuccinardi T; (2018) International Journal of Molecular Sciences. 19