The Galaxy platform for accessible, reproducible, and collabor ativ e data analyses: 2024 update
(2024) Nucleic Acids Research.
Krzysztof Poterlowicz
Professor
- Area
- School of Chemistry & Biosciences
- Faculty of Life Sciences
- Phone
Biography
Professor of Bioinformatics and Biomedical Data Science interested in advancing FAIR data management and computational method in biomedical domain through research and training.
Director of Research for Computational and Data Driven Science at Faculty of Life Science, University of Bradford https://www.bradford.ac.uk/life-sciences/research-and-innovation/computational-and-data-driven-scien...
ELIXIR UK Training Co-ordinator and Principal Investigator on UKRI funded ELIXIR-UK DaSH Fellowship that aims to create culture change with fellows producing and delivering FAIR data stewardship training and acting as ambassadors to embed research data management in their organisations https://elixiruknode.org/projects/elixir-uk-dash/
Research
Recent projects include:
- ELIXIR-UK: FAIR Data Stewardship training
- Reference hCNV datasets, use-case workflows and benchmarking
- Khaled Jumah - Bioinformatics Research Assistant
- Katarzyna Kaminiecka -Lead Data Stewardship Trainer
- Katarzyna Kaminiecka
- Mingkai Wang
- Wafa Alsahly
- Sirli Anniko
- Sumaia Sabouni
- Isabel Hyde (with University of Leeds)
Publications
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A research data management (RDM) community for ELIXIR [version 2; peer review: 2 approved].
(2024) F1000 Research.
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
Alexander E Ostrovsky18, Alexandru Mahmoud18, Andrew J Lonie36, Anna Syme36, Anne Fouilloux33, Anthony Bretaudeau15, Anton Nekrutenko25, Anup Kumar35, Arthur C Eschenlauer34, Assunta D DeSanto25, Aysam Guerler18, Beatriz Serrano-Solano35, Bérénice Batut35, Björn A Grüning35, Bradley W Langhorst22, Bridget Carr18, Bryan A Raubenolt6, Cameron J Hyde26, Catherine J Bromhead36, Christopher B Barnett29, Coline Royaux21, Cristóbal Gallardo35, Daniel Blankenberg6, Daniel J Fornika2, Dannon Baker18, Dave Bouvier25, Dave Clements1, David A de Lima Morais39, David Lopez Tabernero35, Delphine Lariviere25, Engy Nasr35, Enis Afgan18, Federico Zambelli37, Florian Heyl35, Fotis Psomopoulos7, Frederik Coppens40, Gareth R Price38, Gianmauro Cuccuru35, Gildas Le Corguillé28, Greg Von Kuster25, Gulsum Gudukbay Akbulut25, Helena Rasche11, Hans-Rudolf Hotz13, Ignacio Eguinoa40, Igor Makunin26, Isuru J Ranawaka17, James P Taylor18, Jayadev Joshi6, Jennifer Hillman-Jackson25, Jeremy Goecks23, John M Chilton25, Kaivan Kamali25, Keith Suderman18, Krzysztof Poterlowicz4, Le Bras Yvan21, Lucille Lopez-Delisle12, Luke Sargent23, Madeline E Bassetti26, Marco Antonio Tangaro14, Marius van den Beek25, Martin Čech16, Matthias Bernt30, Matthias Fahrner35, Mehmet Tekman35, Melanie C Föll35, Michael C Schatz18, Michael R Crusoe41, Miguel Roncoroni40, Natalie Kucher18, Nate Coraor25, Nicholas Stoler25, Nick Rhodes38, Nicola Soranzo9, Niko Pinter35, Nuwan A Goonasekera36, Pablo A Moreno10, Pavankumar Videm35, Petera Melanie15, Pietro Mandreoli37, Pratik D Jagtap34, Qiang Gu23, Ralf J.M. Weber3, Ross Lazarus27, Ruben H.P. Vorderman20, Saskia Hiltemann11, Sergey Golitsynskiy18, Shilpa Garg19, Simon A Bray35, Simon L Gladman36, Simone Leo8, Subina P Mehta34, Timothy J Griffin34, Vahid Jalili5, Vandenbrouck Yves31, Victor Wen18, Vijay K Nagampalli6, Wendi A Bacon24, Willem de Koning11, Wolfgang Maier35, Peter J Briggs42 (2022) Nucleic Acids Research.
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The effect of a known object in a static image of a burn to improve the burn size estimation
Kirsty Smith a d , Krzystof Poterlowicz b , Stephen Southern c , Ajay L. Mahajan a d , Sharmila Jivan (2021) Burns.
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The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research [version 1; peer review: awaiting peer review]
David Salgado;Irina M. Armean;Michael Baudis;Sergi Beltran;Salvador Capella-Gutierrez;Denise Carvalho-Silva;Victoria Dominguez Del Angel;Joaquin Dopazo;Laura I. Furlong;Bo Gao;Leyla Garcia;Dietlind Gerloff;Ivo Gut;Attila Gyenesei;Nina Habermann;John M. Hancock;Marc Hanauer;Eivind Hovig;Lennart F. Johansson;Thomas Keane;Jan Korbel;Katharina B. Lauer;Steve Laurie;Brane Leskošek;David Lloyd;Tomas Marques-Bonet;Hailiang Mei;Katalin Monostory;Janet Piñero;Krzysztof Poterlowicz;Ana Rath;Pubudu Samarakoon;Ferran Sanz;Gary Saunders;Daoud Sie;Morris A. Swertz;Kirill Tsukanov;Alfonso Valencia;Marko Vidak;Cristina Yenyxe González;Bauke Ylstra;Christophe Béroud; (2020)
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Ewastools: Infinium Human Methylation BeadChip pipeline for population epigenetics integrated into Galaxy
Murat K., Grüning B., Poterlowicz P. W., Westgate G., Tobin D. J., Poterlowicz K. (2020) Gigascience. 9
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Cellular sheddases are induced by Merkel cell polyomavirus small tumour antigen to mediate cell dissociation and invasiveness
Nwogu, N.; Boyne, James R.; Dobson, S.J.; Poterlowicz, Krzysztof; Blair, G.E.; Macdonald, A.; Mankouri, J.; Whitehouse, A. (2019)
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Interplay of MicroRNA-21 and SATB1 in Epidermal Keratinocytes during Skin Aging.
Ahmed MI;Pickup ME;Rimmer AG;Alam M;Mardaryev AN;Poterlowicz K;Botchkareva NV;Botchkarev VA; (2019) Journal of Investigative Dermatology.
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MCV-miR-M1 targets the host-cell immune response resulting in the attenuation of neutrophil chemotaxis
Akhbari, Pouria; Tobin, Desmond J.; Poterlowicz, Krzysztof; Roberts, W.; Boyne, James R. (2018)
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The cellular chloride channels CLIC1 and CLIC4 contribute to virus-mediated cell motility
Stakaityte, G.; Nwogu, N.; Lippiat, J.D.; Blair, G.E.; Poterlowicz, Krzysztof; Boyne, James R.; Macdonald, A.; Mankouri, J.; Whitehouse, A. (2018)
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Inhibition of HOX/PBX dimer formation leads to necroptosis in acute myeloid leukemia cells
Alharbi, R.A.; Pandha, H.S.; Simpson, G.R.; Pettengell, R.; Poterlowicz, Krzysztof; Thompson, A.; Harrington, K.J.; El-Tanani, Mohamed; Morgan, Richard (2017)
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p63 transcription factor regulates nuclear shape and expression of nuclear envelope-associated genes in epidermal keratinocyte
Rapisarda, Valentina; Malashchuk, Igor; Asamaowei, Inemo E.; Poterlowicz, Krzysztof; Fessing, Michael Y.; Sharov, A.A.; Karakesisoglou, I.; Botchkarev, Vladimir A.; Mardaryev, Andrei N. (2017)
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p63 Transcription Factor Regulates Nuclear Shape and Expression of Nuclear Envelope-Associated Genes in Epidermal Keratinocytes
Rapisarda V.;Malashchuk I.;Asamaowei I.;Poterlowicz K.;Fessing M.;Sharov A.;Karakesisoglou I.;Botchkarev V.;Mardaryev A. (2017) Journal of Investigative Dermatology. 137, 2157-2167.
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5C analysis of the Epidermal Differentiation Complex locus reveals distinct chromatin interaction networks between gene-rich and gene-poor TADs in skin epithelial cells
Poterlowicz K.;Yarker J.;Malashchuk I.;Lajoie B.;Mardaryev A.;Gdula M.;Sharov A.;Kohwi-Shigematsu T.;Botchkarev V.;Fessing M. (2017) PLoS Genetics. 13
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Inhibition of HOX/PBX dimer formation leads to necroptosis in acute myeloid leukemia cells
Alharbi, R.A.;Pandha, H.S.;Simpson, G.R.;Pettengell, R.;Poterlowicz, K.;Thompson, A.;Harrington, K.;El-Tanani, M.;Morgan, R.; (2017) Oncotarget.
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Cbx4 maintains the epithelial lineage identity and cell proliferation in the developing stratified epithelium
Mardaryev, Andrei N.; Liu, B.; Rapisarda, Valentina; Poterlowicz, Krzysztof; Malashchuk, Igor; Rudolf, Jana; Sharov, A.A.; Jahoda, C.J.; Fessing, Michael Y.; Benitah, S.; Xu, G.; Botchkarev, Vladimir A. (2016)
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Circulating tumour DNA: a minimally invasive biomarker for tumour detection and stratification
Surani, Arif A.; Poterlowicz, Krzysztof (2016)
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MicroRNA-214 controls skin and hair follicle development by modulating the activity of the Wnt pathway
Ahmed, Mohammed I.; Alam, Majid A.; Emelianov, V.U.; Poterlowicz, Krzysztof; Patel, Ankit; Sharov, A.A.; Mardaryev, Andrei N.; Botchkareva, Natalia V. (2014)
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p63 and Brg1 control developmentally regulated higher-order chromatin remodelling at the epidermal differentiation complex locus in epidermal progenitor cells
Mardaryev, Andrei N.; Gdula, Michal R.; Yarker, Joanne L.; Emelianov, V.U.; Poterlowicz, Krzysztof; Sharov, A.A.; Sharova, T.Y.; Scarpa, J.A.; Chambon, P.; Botchkarev, Vladimir A.; Fessing, Michael Y. (2014)
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Complex Changes in the Apoptotic and Cell Differentiation Programs during Initiation of the Hair Follicle Response to Chemotherapy
Sharova, T.Y.; Poterlowicz, Krzysztof; Botchkareva, Natalia V.; Kondratiev, N.A.; Aziz, A.; Spiegel, J.H.; Botchkarev, Vladimir A.; Sharov, A.A. (2014)
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Bone morphogenetic protein signaling suppresses wound-induced skin repair by inhibiting keratinocyte proliferation and migration
Lewis, Christopher J.; Mardaryev, Andrei N.; Poterlowicz, Krzysztof; Sharova, T.Y.; Aziz, A.; Sharpe, David T.; Botchkareva, Natalia V.; Sharov, A.A. (2014)
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Remodeling of Three-Dimensional Organization of the Nucleus during Terminal Keratinocyte Differentiation in the Epidermis
Gdula, Michal R.; Poterlowicz, Krzysztof; Mardaryev, Andrei N.; Sharov, A.A.; Fessing, Michael Y.; Botchkarev, Vladimir A.; Peng, Yonghong (2013)
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Genome organizing function of SATB1 in tumor progression.
Kohwi-Shigematsu, T.; Poterlowicz, Krzysztof; Ordinario, E.; Han, H.J.; Botchkarev, Vladimir A.; Kohwi, Y. (2013)
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Cigarette smoke-induced transgenerational alterations in genome stability in cord blood of human F1 offspring
Laubenthal, Julian; Zlobinskaya, O.; Poterlowicz, Krzysztof; Baumgartner, Adolf; Gdula, Michal R.; Fthenou, E.; Keramarou, M.; Hepworth, S.J.; Kleinjans, J.C.; van Schooten, F.J.; Brunborg, G.; Godschalk, R.W.; Schmid, Thomas E.; Anderson, Diana (2012)
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Characterization of Changes in the Proteome in Different Regions of 3D Multicell Tumor Spheroids
McMahon, Kelly M.; Volpato, Milène; Chi, H.Y.; Musiwaro, P.; Poterlowicz, Krzysztof; Peng, Yonghong; Scally, Andy J.; Patterson, Laurence H.; Phillips, Roger M.; Sutton, Chris W. (2012)
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Lhx2 differentially regulates Sox9, Tcf4 and Lgr5 in hair follicle stem cells to promote epidermal regeneration after injury
Mardaryev, Andrei N.; Meier, N.; Poterlowicz, Krzysztof; Sharov, A.A.; Sharova, T.Y.; Ahmed, Mohammed I.; Rapisarda, Valentina; Lewis, Christopher J.; Fessing, Michael Y.; Ruenger, T.M.; Bhawan, J.; Werner, S.; Paus, R.; Botchkarev, Vladimir A. (2011)
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p63 regulates Satb1 to control tissue-specific chromatin remodeling during development of the epidermis
Fessing, Michael Y.; Mardaryev, Andrei N.; Gdula, Michal R.; Sharov, A.A.; Sharova, T.Y.; Rapisarda, Valentina; Gordon, K.B.; Smorodchenko, A.D.; Poterlowicz, Krzysztof; Ferone, G.; Kohwi, Y.; Missero, C.; Kohwi-Shigematsu, T.; Botchkarev, Vladimir A. (2011)
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BMP signaling induces cell-type-specific changes in gene expression programs of human keratinocytes and fibroblasts
Fessing, Michael Y.; Atoyan, R.; Shander, B.; Mardaryev, Andrei N.; Botchkarev, V.V. Jr; Poterlowicz, Krzysztof; Peng, Yonghong; Efimova, T.; Botchkarev, Vladimir A. (2010)